GABBs Publications
Peer-reviewed Publications
- R. Kalyanam, L. Zhao and C.X. Song. GeoEDF: A Plug-and-play Workflow Framework for Earth Science Research. Demonstration track. Gateways 2020 conference, Bethesda, Maryland, October 19-21, 2020. Accepted
- J. Shin, L. Zhao, C.X. Song, R. Kalyanam, and J. Jin. SACI - A Cloud Based Real Time Sensor Data Management and Analysis Platform. Demonstration track. Gateways 2020 conference, Bethesda, Maryland, October 19-21, 2020. Accepted
- I. Kim, L. Zhao, C. X. Song, V. Merwade, A. Rajib. SWATShare: A Collaborative Cyberinfrastructure for Hydrologic Research and Education Using SWAT Model, Demonstration track. Gateways conference, Bethesda, Maryland, October 19-21, 2020. Accepted.
- R. Kalyanam, L. Zhao, C. X. Song, V. Merwade, J. Jin, U. Baldos, J. Smith. GeoEDF: An Extensible GEospatial Data Framework for FAIR Science. In Practice and Experience in Advanced Research Computing (PEARC ’20), July 27–31, 2020. ACM, New York, NY, USA.
- Lan Zhao, Carol X. Song, Larry Biehl, Venkatesh Merwade, Matthew Huber, Jing Liu, Uris Baldos, and Ilya Shunko. 2020. Building a Gateway Infrastructure for Interactive Cyber Training and Workforce Development. In Practice and Experience in Advanced Research Computing (PEARC ’20), July 27–31, 2020. ACM, New York, NY, USA, 8 pages. https://doi.org/10.1145/3311790.3396639
- L. Zhao, C. X. Song, I. Shunko, S. Clark. Suit Up Your Gateway for Interactive Cyber Training. In 12th International Workshop on Science Gateways (IWSG 2020), 11 June 2020.
- Kalyanam, R., Zhao, L. and Song, X.C. GeoEDF – An Extensible Geospatial Data Framework for FAIR Science. 11th International Workshop on Science Gateways (IWSG 2019), Ljubljana, Slovenia, 12-14 June 2019
- G. Li, J. Zhao, V. Murray, C. Song & L. Zhang (2019) Gap analysis on open data interconnectivity for disaster risk research. Geo-spatial Information Science, 22:1, 45-58, DOI: 10.1080/10095020.2018.1560056
- Matei, S., Kalyanam, R., Zhao, L., Song, C. (2018). Social Media Modeling of Human Behavior in Natural Emergencies. 2018 Practice & Experience in Advanced Research Computing Conference (PEARC18), Pittsburgh, PA, July 22-26, 2018.
- Biehl, L., Zhao, L., Ellis, C., Kalyanam, R., Campbell, R. and Song, C. (2018). Introducing Research Concepts to Middle School Students via a Geospatial Science Gateway. 2018 Practice & Experience in Advanced Research Computing Conference (PEARC18), Pittsburgh, PA, July 22-26, 2018.
- Zhao, L., Kalyanam, R. and Song, C.X. Challenges and experience in enabling science gateway interoperability – A case study on MyGeoHub. 10thInternational Workshop on Science Gateways (IWSG), Edinburgh, Scotland, June 13-15, 2018.
- Kalyanam, R., Zhao, L., Song, C. X., Biehl, L., Kearney, K., Kim, I L., Shin, J., Villoria, N., Merwade, V. (2017) MyGeoHub - A Sustainable and Evolving Geospatial Science Gateway. Future Generation of Computer Systems (under review).
- R. Campbell, L. Zhao, R. Kalyanam, C.X. Song and L. Biehl. (Oct 2017). Extending Gateways into the Field: Geospatial Extensions and Remote Data Services. 12thGateway Computing Environments (Gateways 2017), Ann Arbor, MI, October 2017.
- Kalyanam, R., Campbell, R., Kearney, D., Delgass, L., Biehl, L., Zhao, L., Ellis, C., Song, C. X. Cloud-enabling a Collaborative Research Platform: The GABBs Story. Practice and Experience in Advanced Research Computing (PEARC17), New Orleans, LA, July 9-13, 2017.
- Zhao, L., Song, C. X., Kalyanam, R., Biehl, L., Campbell, R., Delgass, L., Kearney, D., Wan, W., Shin, J., Kim, I L., Ellis, C. GABBS - Reusable Geospatial Data Analysis Building Blocks for Science Gateways. 9th International Workshop on Science Gateways (IWSG 2017), Poland, June 19-21, 2017.
- Villoria, N.B., Elliott, J., Müller, C., Shin, J., Zhao, L. and Song, C.X. (2017) Web-based download, visualization, and aggregation of future temperature and precipitation during the growing season of major crops. SoftwareX, Nov 2017. (PDF)
- Zhao, L., Song, C.X. and Biehl, Larry. MyGeoHub Science Gateway for Spatial Data and a Model for Sustainability. Gateways 2016, San Diego, CA, November 2-3, 2016.
- Wan, W., Zhao, L., Shin, J., Zhe, S. and Song, C. X. PyMapLib for Rapid Development of Geospatial Data Analysis Tools. The Third International Conference on CyberGIS and Geospatial Data Science (CyberGIS16), Urbana, IL, July 26–28, 2016.
- Müller, C., J. Elliott, J. Chryssanthacopoulos, A. Arneth, J. Balkovic, P. Ciais, D. Deryng, C. Folberth, M. Glotter, S. Hoek, T. Iizumi, R. C. Izaurralde, C. Jones, N. Khabarov, P. Lawrence, W. Liu, S. Olin, T. A. M. Pugh, D. Ray, A. Reddy, C. Rosenzweig, A. C. Ruane, G. Sakurai, E. Schmid, R. Skalsky, C. X. Song, X. Wang, A. de Wit, and H. Yang. Global Gridded Crop Model evaluation: benchmarking, skills, deficiencies and implications. Geoscientific Model Development, 2016. doi:10.5194/gmd-2016-207
- Villoria, NB, Elliott, J, Müller, C, Shin, J, Zhao, L, and Song, C., 2016, January. Rapid aggregation of global gridded crop model outputs to facilitate cross-disciplinary analysis of climate change impacts in agriculture. Environmental Modelling & Software. 75, pp.193-201. doi:10.1016/j.envsoft.2015.10.016
- Kalyanam, R., Campbell, R.A., Wilson, S. P., Meunier, P., Zhao, L., Hillery, B. A. and Song. C.X. Integrating HUBzero and iRODS: Geospatial Data Management for Collaborative Scientific Research, The 2016 iRODS User Group Meeting, Chapel Hill, NC, June 7-9, 2016.
- Wu, Jingbo (2016) Developing Open Source Geospatial Data Analysis Building Blocks Software. The Journal of Purdue Undergraduate Research: Vol. 6, Article 35. doi:10.5703/1288284316217
Other Papers:
- Kalyanam, R., Song, C. and Zhao, L. Catalyzing the Geospatial Software Community of the Future (Position paper). Conceptualizing a Geospatial Software Institute (GSI) Workshop 3: Strategic Plan and Governance of GSI, Annapolis, MD, January 27-29, 2019.
- Song, C., Kalyanam, R. and Zhao, L. Challenges in discovering, accessing, processing and utilizing large remote spatial data. Position paper, Conceptualizing a Geospatial Software Institute (GSI) Workshop 2: Geospatial Use Cases and Core Technical Capabilities, Chicago, IL, July 15-17, 2018
- CIF21 DIBBs: Integrating Geospatial Capabilities into HUBzero, PI Carol Song, NSF award #1261727. White paper at NSF DIBBs PI workshop, Washington D.C., July 2018
- Song, C., Kalyanam, R. and Zhao, L. Envisioning an Open, Collaborative and Seamless Geospatial Software Ecosystem. Position paper, GSI community workshop on Geospatial Software: Connecting Big Data with Geospatial Discovery and Innovation, Los Angeles, CA, January 28-30, 2018
- Song, C., Smith, P. and Younts, A. Creating a seamless campus cyberinfrastructure to support data-driven domain sciences. Position paper. Research Data Management Implementation workshop, Arlington, VA, September 14-15, 2017
- Kalyanam, R., Zhao, L and Song, C. GABBs: Geospatial Data Building Blocks (2017). Position paper at The First NSF Data Infrastructure Building Blocks Workshop, Arlington, VA, January 11-12, 2017.
Tutorials & Education Events:
- Huber, M., Merwade, V., Song, C., Zhao, L. and Kim, I.L. Graduate level course FAIR Data Practice, EAPS 59100 Purdue, Fall semester 2019 (course using mygeohub.org and supported by SSG staff, including giving guest lectures)
- J. Liu, U. Baldos and T. Hertel. Short course on Multi-scale Analysis of Sustainability, West Lafayette, IN, September 25, 2019 (course using mygeohub.org and supported by SSG staff)
- Uris Baldos. Workshop on Long-run analysis of SDGs linked to the food-environment-energy using open-source economic modeling. Sustainability and Development Conference, U. of Michigan, October 11, 2019 (course using mygeohub.org and supported by SSG staff)
- Lu, E, Short Course in Geospatial Data Extraction and Visualization, online tutorial. Summer 2019. Accessible: https://mygeohub.org/courses/geo_viewing.
- Workshop on Open-Source Analysis of SDGs at the Food-Water-Energy Nexus Using Global, Gridded Modeling on June 7, 2019 at Tecnológico de Monterrey, Mexico (supported by SSG staff and mygeohub)
- Jungha Woo, Lan Zhao. Workshop on Open-Source Analysis of SDGs at the Food-Water-Energy Nexus Using Global, Gridded Modeling, 2018 Sustainability & Development Conference, Ann Arbor, MI, November 9, 2018 (hands-on training of SIMPLE-G and SIMPLE-G-US on MyGeoHub)
- Kalyanam, R. 2018 SGCI Hackathon, Pittsburgh, PA, July 26-27, 2018 (designed and ran the hackathon geospatial data project using MyGeoHub)
- Song, C. X., Zentner, M., Hillery, E., Kalyanam, R., Kearney, D., Zhao, L., Ellis, C. Interactive Science and Geospatial Visualization Tools for HUBzero Science Gateways. Tutorial. Practice and Experience in Advanced Research Computing (PEARC17), New Orleans, LA, July 9-13, 2017.
- L. Biehl, R. Kalyanam, C. Ellis. TOTAL Camp, West Lafayette, IN, June 2017
- Benham, D., Clark, S., Song, C.X., Betsy, H., Smith, P. and Ellis, C. Building a Campus Cyberinfrastructure Hub on the Cloud with HUBzero, Tutorial. The 2016 Extreme Science and Engineering Discovery Environment Conference (XSEDE16), Miami, FL, July 17-21, 2016.
- Biehl, L.L., Zhao, L., Perez, A.T.C., Ellis, C. and Song, C.X. Geospatial data around you. Presentation and tutorial. Turned Onto Technology And Leadership – the TOTAL Camp, West Lafayette, IN, June 2016.
Peer-reviewed and invited Presentations, invited panel/workshop participations, other presentations
- Kalyanam, R., GeoEDF: An Extensible Geospatial Data Framework Towards FAIR Science, Purdue GIS Day, West Lafayette, IN, November 7, 2019
- Song, C. MyGeoHub for Geospatial Data-Driven Science and Training. Purdue booth. Supercomputing, Denver, CO, November 17-22, 2019
- Song, C., Kalyanam, R., and Zhao, L. Advancing A Geospatial Science Gateway with An Extensible Data Framework for FAIR Science. CODATA 2019 Towards next-generation data-driven science: policies, practices and platforms, Beijing, China, 19-20 September 2019.
- Champions Fellows Presentation at the PEARC19 Conference: Chet Langin, Southern Illinois University, presented on his Fellows project with PI Uris Baldos and Mentor Lan Zhao. (July/August 2019)
- Merwade, V., A. Rajib, I Luk Kim, J. Shin, J. Smith, L. Zhao, C. Song, HydroGlobe - a platform enabling the integration of earth observations in hydrologic models, presentation at CUAHSI Conference on Hydroinformatics, Provo, UT, 29-31 July, 2019.
- Song, C. What should the GSI do? Panelist presentation at the Geospatial Software Institute Conceptualization Workshop “Strategic Plan and Governance of GSI”, Annapolis, MD, July 14-16, 2019.
- Merwade, V., A. Rajib, S. Saksena, I Luk Kim, L. Zhao and C. Song. Hyper-resolution flood modeling and mapping for the Ohio River Basin, Ohio River Basin Flood Risk Management Workshop, Erlanger, KY, April 11, 2019.
- Song, C. Everything you ever wanted to know about MyGeoHub! (Invited). HUBzero annual MatchBox meeting, West Lafayette, IN, December 13, 2018
- M. Zentner and C.X. Song. Solving Science Gateway Sustainability as a Community: MyGeoHub.org and OneSciencePlace.org (Invited talk). AGU Fall Meeting, Washington D.C., December 10-14, 2018
- Kalyanam, R., Song, C. ESIP Data Help Desk, AGU Fall Meeting, December 10, 2018.
- Song, C. Science Gateway MyGeoHub, presentation at Purdue booth, Supercomputing conference, November 2018.
- Song, C. Sustaining a geospatial science gateway to support FAIR science practices and training. GSA Annual Meeting, Indianapolis, IN, November 4, 2018.
- Song, C. & Smith, J. Geospatial data building blocks and MyGeoHub, presentation to the XSEDE Campus Champions Tech Talk webinar, October 31, 2018.
- Song, C. What is the GeoHub? Presentation at the 2018 Conference on Long Run Sustainability of US Agriculture, National Press Club, Washington D.C., September 17, 2018.
- Song, C. Array of Things User Workshop, Argonne National Lab, Chicago, IL, August 28-30.
- Zhao, L., Kim, I.L., Shin, J., Merwade, V., and Song, C.X. (2018). Showcasing a Collaborative Hydrological Modeling Platform. 2018 Practice & Experience in Advanced Research Computing Conference (PEARC18), Pittsburgh, PA, July 22-26, 2018.
- Song, C. Rethinking NSF's Computational Ecosystem for 21st Century Science and Engineering Workshop, Alexandria, VA, May 30-31, 2018
- Song, C. First Software Sustainability Institute Workshop of URSSI (US Research Software Sustainability Institute), Berkeley, CA, April 12-15, 2018.
- Song, C. Panelist at GSI workshop: Geospatial Software: Connecting Big Data with Geospatial Discovery and Innovation, Los Angeles, CA, January 28-30, 2018
- Larry Biehl, et al. MultiSpec: A Desktop and Online Geospatial Image Data Processing Tool, oral presentation, AGU Fall Meeting, New Orleans, LA, Dec 2017 (slides available at: https://mygeohub.org/resources/1385)
- Song, C.X. Geospatial Data Building Blocks and MyGeoHub Science Gateway. Presentation at Purdue booth. Supercomputing conference, Denver, CO, November 2017.
- Rajesh Kalyanam, Lan Zhao, Rob Campbell, Derrick Kearney, I Luk Kim, Jaewoo Shin, Larry Biehl, Wei Wan and Carol Song. (2017). Demo: MyGeoHub Geospatial Gateway. Gateway Computing Environments (Gateways 2017), Ann Arbor, MI, October 2017
- Song, C.X. An open-source geospatial cyberinfrastructure for interdisciplinary collaboration and broader engagement. Impacts World 2017, Potsdam, Germany, October 11-13, 2017.
- Song, C.X. Building, Evolving, and Sustaining A Geospatial Science Gateway. Invited presentation at the Earth Science Information Partnership (ESIP) Summer Meeting, Bloomington, IN, July 24-26, 2017.
- Adnan Rajib, I Luk Kim, Mehmet Ercan, Venkatesh Merwade, Lan Zhao and Carol Song. Enabling high performance online calibration of SWAT models in SWATShare, 2017 CUAHSI Conference on Hydroinformatics, July 25 – 27, 2017, Tuscaloosa, Alabama.
- Adnan Rajib, Venkatesh Merwade, Lan Zhao, Jaewoo Shin, Jack Smith and Carol Son. HydroGlobe – A cyber-enabled platform for auto-extraction and processing of earth observations for hydrologic analysis, 2017 CUAHSI Conference on Hydroinformatics, July 25 – 27, 2017, Tuscaloosa, Alabama
- Song, C.X. and Zhao, L. Geospatial Data Hub to Support Big Ideas! Presentation at the USDA/AFRI project workshop "Assessing the Long Run Sustainability of US Agriculture in an Integrated Global Economy", West Lafayette, IN, May 11-12, 2017.
- Song, C.X. GABBs: Geospatial Data Building Blocks (2017). The first NSF Data Infrastructure Building Blocks Workshop (the panel of significant results), Arlington, VA, January 11-12, 2017.
- Carol Song. GABBs: Cyberinfrastructure for Self-Service Geospatial Data Exploration, Computation and Sharing, invited presentation at the South Big Data Hub-Data Sharing and Infrastructure Working Group meeting, November 11, 2016.
- Song, C.X. Gap Analysis on Open Data Interconnectivity for Global Disaster Risk Research. Presentation. SciDataCon 2016, September 11-13, 2016.
- Song, C.X. Geospatial-enabled Data Exploration and Computation through Data Infrastructure Building Blocks. Presentation. The Workshop on Best Practices in Data Infrastructure, Pittsburgh, PA, May 17-18, 2016.
- Song, C.X. Science Software as a Service. Presentation at West Virginia University, May 16, 2016.
- Song, C.X. and Zhao, L. Cyberinfrastructure Support for the AFRI Project. AFRI Project Workshop, West Lafayette, IN, April 15, 2016.
- Song, C.X. Geospatial-enabled Data Exploration and Computation through Data Infrastructure Building Blocks, The 5th National Data Service Workshop, Chapel Hill, NC, April 4-6, 2016.
- Song, C.X. GABBS for FEW Community, 2016 Midwest Big Data Hub all-hands meeting, Chicago, IL, March 21-22, 2016.
- Song, C.X., L. Biehl, V. Merwade, N. Villoria. Geospatial-enabled Data Exploration and Computation through Data Infrastructure Building Blocks. The American Geographical Union 2015 Fall Meeting, IN51C: Exploiting Big Earth Data: Computation, Testing, and CyberGIS II, San Francisco, CA, December 18, 2015 (invited oral presentation)
- Biehl, L. GeoSpatial Tools/Data provided by ITaP Research Computing, Purdue College GIS Day, West Lafayette, IN, November 12, 2015.
- Song, C.X., L. Biehl, W. Wan. Broadening Access to Geospatial Data Analysis and Visualization, 9th Symposium of the International Society for Digital Earth (ISDE), Halifax, Nova Scotia, Canada, October 5, 2015.
- Song, C. X. The GABBs Report – Building Geospatial Capability in HUBzero, invited presentation at The HUBzero annual conference Hubbub 2015, Indianapolis, IN, September 14 15, 2015
- Biehl, L. Remote Sensing Analysis in HUBzero, The HUBzero annual conference Hubbub 2015, Indianapolis, IN, September 14 15, 2015
- Kalyanam, R. Data driven Collaboration Environments: Integrating HubZero and iRODS, The HUBzero annual conference Hubbub 2015, Indianapolis, IN, September 14 15, 2015
- Ko, H. J. Upload, Configure, Analyze, and Share Geospatial Data in 3 Minutes, The HUBzero annual conference Hubbub 2015, Indianapolis, IN, September 14 15, 2015
- Zhao, L. Delivering Climate Data to a Broad User Community, The HUBzero annual conference Hubbub 2015, Indianapolis, IN, September 14 15, 2015
- Song, C. X., GABBs Project Overview, DIBBS PI meeting, August 11, 2014. <link>
Posters
- R. Kalyanam, L. Zhao, C. X. Song, V. Merwade, U. Baldos, J. Jin, J. Smith. GeoEDF: An Extensible Geospatial Data Framework for FAIR Science. Online iPoster at the EarthCube 2020 Annual Meeting (virtual).
- C. Song & R. Kalyanam. CSSI Framework: Extensible Geospatial Data Framework towards FAIR Science. Presentation and poster at the NSF CSSI PI Workshop, Seattle WA, February 12-14, 2020. (talk slides, poster)
- R. Kalyanam, L. Zhao, J. Jin, L L. Biehl, U. Baldos, R. Campbell, C. Ellis, J. Smith, N. Brewer, V. Merwade, J. Woo and C. X Song. GeoEDF – An Extensible Geospatial Data Framework for FAIR Science. AGU Fall Meeting, San Francisco, CA, December 9-13, 2019
- V. Merwade, C.X Song, M. Huber, and W. Huang. CyberTraining for Findable, Accessible, Interoperable, and Reusable (FAIR) science in Water and Climate. AGU Fall Meeting, San Francisco, CA, December 9-13, 2019
- V. Merwade, A. Rajib, L. Zhao, J. Shin, I. L. Kim, and C. X Song. HydroGlobe - a platform enabling the integration of earth observations in hydrologic models. poster. AGU Fall Meeting, San Francisco, CA, December 9-13, 2019
- R. Kalyanam, L. Zhao and X. C. Song. GeoEDF: An Extensible Geospatial Data Framework for FAIR Science. Gateways 2019 conference, San Diego, CA, September 23-25, 2019.
- L. Zhao, X. C. Song, R. Kalyanam, V. Merwade, M. Huber, L. Biehl, C. Thompson, R. Campbell and C. Ellis. Leveraging MyGeoHub Gateway for Cyber Training and Workforce Development. Gateways 2019 conference, San Diego, CA, September 23-25, 2019.
- Amrish Nayak, Simplifying access and use of large remote geospatial datasets. Purdue Discovery Park Undergraduate Research Symposium, July 25, 2019 (summer research internship)
- Edwin Lu, Simplifying geospatial visualization and analysis. Purdue Discovery Park Undergraduate Research Symposium, July 25, 2019 (summer research internship)
- Adnan Rajib, Venkatesh Merwade, Lan Zhao, Jaewoo Shin, I Luk Kim, Carol Song, Heather E. Golden, Charles R. Lane, Bridging the gap between remotely sensed big data and watershed hydrologic models, AGU Fall Meeting, Washington DC, Dec 2018
- Shin, J., Zhao, L., Song, C.X., Jin, J., Song, Z., Wang, L. (2018). A Flexible, Cloud-based Sensor Data Service Platform. Student poster. 2018 Practice & Experience in Advanced Research Computing Conference (PEARC18), Pittsburgh, PA, July 22-26, 2018.
- Rajesh Kalyanam. MyGeoHub: A collaborative geospatial research and education platform, poster, AGU Fall Meeting, New Orleans, LA, Dec 2017
- Lan Zhao, Adnan Rajib, Venkatesh Merwade, Jaewoo Shin, Jack Smith and Carol X Song. A New Cyber-enabled Platform for Scale-independent Interoperability of Earth Observations with Hydrologic Models, poster, AGU Fall Meeting, New Orleans, LA, Dec 2017.
- Hsu, W., Biehl, L., Maud, A.R. and Yeh, T. Developing an Online Geospatial Data Processing Tool Using the HUBzero Platform. Poster. Practice and Experience in Advanced Research Computing (PEARC17), New Orleans, LA, July 9-13, 2017.
- Zhao, L., Song, C.X. and Biehl, L. GABBs: Cyberinfrastructure for Self-Service Geospatial Data Exploration, Computation, and Sharing. Poster presentation at the American Geophysics Union (AGU) Fall Meeting 2016, San Francisco, CA, December 12-16, 2016.
- Zhao, L., Kim, I.L., Song, C.X., Merwade, V., Rajib, A., Morsy, M., Goodall, J., Miles, B., Stealey, M., Dash, P. and Tarboton, D. Bridging Hydroinformatics Services Between HydroShare and SWATShare. Poster presentation at the American Geophysics Union (AGU) Fall Meeting, San Francisco, CA, December 12-16, 2016.
- Lan Zhao and GABBS team. Developing Geospatial Data Analysis Building Blocks (GABBS). 2016 Gateways conference, San Diego, CA, November 2-3, 2016.
- Lan Zhao, Carol Song and Larry Biehl. MyGeoHUB.org - An Open Platform for Geospatial Tool Development and Sharing. 2016 Gateways conference, San Diego, CA, November 2-3, 2016.
- Purdue GIS Day, West Lafayette, IN, November 4, 2016 (available in ePub)
- Lan Zhao, I Luk Kim, Venkatesh Merwade, Adnan Rajib and Carol Song. Enabling Hydrological Modeling Education Using an XSEDE Science Gateway. Poster at The 2016 Extreme Science and Engineering Discovery Environment Conference (XSEDE16), Miami, FL, July 17-21, 2016.
- Zhao, L. and Song, C.X. Connecting XSEDE Resources to Geospatial Data Analysis Workflows using GABBS Building Blocks. Poster at The 2016 Extreme Science and Engineering Discovery Environment Conference (XSEDE16), Miami, FL, July 17-21, 2016.